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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12920 and 12921 are separated by 948 nucleotides
12921 and 12922 are separated by 122 nucleotides
12922 and 12923 are separated by 639 nucleotides
12923 and 12924 are separated by 163 nucleotides
mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442,717 to 444,581
12920
mRNA_4553: 12921 - SUPERFAMILY--SSF81383, at 445,530 to 447,635
12921
mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447,758 to 451,562
12922
mRNA_4555: 12923 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 452,202 to 455,003
12923
mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455,167 to 456,572
12924
Group
Condition
mRNA
_4552
mRNA
_4553
mRNA
_4554
mRNA
_4555
mRNA
_4556
12920
12921
12922
12923
12924
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
N.D.
-0.0
-2.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
N.D.
-0.5
-0.7
auxotrophy
Dropout Complete
-0.3
-0.3
N.D.
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.5
N.D.
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
N.D.
-0.1
-0.6
auxotrophy
YNB Glucose
-0.6
+0.1
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
N.D.
-0.6
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
N.D.
+0.2
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
N.D.
+0.2
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.3
N.D.
+0.1
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
N.D.
+0.4
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
-0.1
-0.2
growth on ypd
YPD
+0.1
+0.3
N.D.
+0.3
-0.8
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
N.D.
-0.0
+0.5
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