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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12923 and 12924 are separated by 163 nucleotides
12924 and 12925 are separated by 62 nucleotides
12925 and 12926 are separated by 233 nucleotides
12926 and 12927 are separated by 974 nucleotides
mRNA_4555: 12923 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 452,202 to 455,003
12923
mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455,167 to 456,572
12924
mRNA_4557: 12925 - KOG3318 Predicted membrane protein, at 456,635 to 457,680
12925
mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457,914 to 459,915
12926
mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526
12927
Group
Condition
mRNA
_4555
mRNA
_4556
mRNA
_4557
mRNA
_4558
mRNA
_4559
12923
12924
12925
12926
12927
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-2.1
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
-0.7
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.7
-0.5
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.2
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.8
+0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.8
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.7
+0.3
-1.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.8
+0.2
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.5
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.8
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.0
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
+0.2
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
+0.3
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.2
-0.1
N.D.
growth on ypd
YPD
+0.3
-0.8
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose
-0.1
-0.3
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
-0.0
-0.1
N.D.
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