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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12925 and 12926 are separated by 233 nucleotides
12926 and 12927 are separated by 974 nucleotides
12927 and 12928 are separated by 558 nucleotides
12928 and 12929 are separated by 208 nucleotides
mRNA_4557: 12925 - KOG3318 Predicted membrane protein, at 456,635 to 457,680
12925
mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457,914 to 459,915
12926
mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526
12927
mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279
12928
mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003
12929
Group
Condition
mRNA
_4557
mRNA
_4558
mRNA
_4559
mRNA
_4560
mRNA
_4561
12925
12926
12927
12928
12929
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
N.D.
-1.3
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.1
N.D.
-0.3
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.6
N.D.
-0.5
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.5
N.D.
+0.4
-1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
N.D.
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
N.D.
-0.5
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
N.D.
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
N.D.
+0.4
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
N.D.
+0.4
+0.0
auxotrophy
Dropout Complete
+0.0
+0.0
N.D.
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.9
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
N.D.
+0.1
+0.5
growth on ypd
YPD
-0.1
+0.2
N.D.
-0.0
+0.7
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