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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12926 and 12927 are separated by 974 nucleotides
12927 and 12928 are separated by 558 nucleotides
12928 and 12929 are separated by 208 nucleotides
12929 and 12930 are separated by 495 nucleotides
mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457,914 to 459,915
12926
mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526
12927
mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279
12928
mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003
12929
mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748
12930
Group
Condition
mRNA
_4558
mRNA
_4559
mRNA
_4560
mRNA
_4561
mRNA
_4562
12926
12927
12928
12929
12930
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
-1.3
-1.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
-0.5
-1.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
-0.3
-1.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.5
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
+0.4
-1.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.5
-0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
-0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.6
+0.2
-0.4
auxotrophy
Dropout Complete
+0.0
N.D.
-0.2
+0.3
-0.6
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.0
-0.1
-0.3
auxotrophy
YNB Glucose
-0.1
N.D.
+0.1
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.1
+0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
+0.4
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
-0.4
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.9
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.3
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.1
+0.5
+0.2
growth on ypd
YPD
+0.2
N.D.
-0.0
+0.7
-0.1
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