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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12927 and 12928 are separated by 558 nucleotides
12928 and 12929 are separated by 208 nucleotides
12929 and 12930 are separated by 495 nucleotides
12930 and 12931 are separated by 551 nucleotides
mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526
12927
mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279
12928
mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003
12929
mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748
12930
mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469,300 to 472,637
12931
Group
Condition
mRNA
_4559
mRNA
_4560
mRNA
_4561
mRNA
_4562
mRNA
_4563
12927
12928
12929
12930
12931
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-1.2
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.3
-1.5
-0.4
+1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-1.0
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-0.0
-0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
-0.2
-0.4
-0.4
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
-0.6
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-1.0
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
+0.2
-0.4
-0.0
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
-0.5
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
-0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.3
+0.1
-0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.1
-0.3
+0.4
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.9
-0.4
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
+0.8
-0.0
growth on ypd
YPD
N.D.
-0.0
+0.7
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.5
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
-0.1
+0.8
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