Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12930 and 12931 are separated by 551 nucleotides12931 and 12932 are separated by 675 nucleotides12932 and 12933 are separated by 478 nucleotides12933 and 12934 are separated by 147 nucleotides mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469,300 to 472,637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473,313 to 477,203 12932 mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477,682 to 479,259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479,407 to 483,783 12934
Group Condition mRNA_4562 mRNA_4563 mRNA_4564 mRNA_4565 mRNA_4566
12930 12931 12932 12933 12934
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.6 -1.0 -0.5 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.0 +0.1 -1.0 -0.1
auxotrophy Dropout Complete -0.6 -0.7 -0.2 +0.1 +0.4
growth on ricinoleic acid YNB Glucose -0.3 +0.4 -0.3 -0.7 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.6 +0.1 -0.0 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.6 +0.1 -0.1 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.4 -0.4 -0.1 -0.0 +0.2
auxotrophy YNB Glucose -0.5 -0.2 -0.3 -0.1 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.8 -0.0 -0.3 -0.5 -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.5 +0.7 -0.1 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 +0.6 -0.2 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.1 -0.3 +0.4 +0.1
growth on oleic acid YNB Glucose -0.3 +0.2 +0.3 -0.1 -0.0
growth on ypd YPD -0.1 +0.0 +0.2 -0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +1.0 +0.0 -0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.4 +0.3 -0.2 +0.0
growth on oleic acid YNB Oleic Acid -0.2 -0.3 +1.1 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.1 +1.0 -0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.5 +1.4 +0.3 -0.5
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.2 +0.4 +0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.8 +0.4 +0.4 +0.1
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