Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12932 and 12933 are separated by 478 nucleotides12933 and 12934 are separated by 147 nucleotides12934 and 12935 are separated by 268 nucleotides12935 and 12936 are separated by 219 nucleotides mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473,313 to 477,203 12932 mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477,682 to 479,259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479,407 to 483,783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484,052 to 485,585 12935 mRNA_4568: 12936 - Hypothetical Protein, at 485,805 to 489,325 12936
Group Condition mRNA_4564 mRNA_4565 mRNA_4566 mRNA_4567 mRNA_4568
12932 12933 12934 12935 12936
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.0 -0.5 -0.0 -0.0 -0.1
growth on ricinoleic acid YNB Glucose -0.3 -0.7 -0.1 -0.0 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.5 -0.5 +0.7 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.3 -0.1 -0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -1.0 -0.1 +0.4 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.0 -0.2 -0.3 -0.1
auxotrophy Dropout Complete -0.2 +0.1 +0.4 +0.1 -0.3
growth on oleic acid YNB Glucose +0.3 -0.1 -0.0 -0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.1 +0.2 +0.1 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.7 -0.1 -0.1 -0.4 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 -0.2 +0.0 +0.1 -0.1
auxotrophy YNB Glucose -0.3 -0.1 +0.3 +0.4 -0.2
growth on ypd YPD +0.2 -0.0 +0.1 +0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy -0.3 +0.4 +0.1 +0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.0 +0.2 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 -0.2 -0.2 +0.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +1.4 +0.3 -0.5 -0.7 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.4 +0.3 +0.1 +0.2 -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.4 +0.4 +0.1 +0.3 -0.2
growth on oleic acid YNB Oleic Acid +1.1 +0.1 -0.1 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.0 -0.1 -0.1 +0.3 +0.1
remove
mRNA_4564
plot
remove
mRNA_4565
plot
remove
mRNA_4566
remove
mRNA_4567
plot
remove
mRNA_4568
plot