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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12933 and 12934 are separated by 147 nucleotides
12934 and 12935 are separated by 268 nucleotides
12935 and 12936 are separated by 219 nucleotides
12936 and 12937 are separated by 155 nucleotides
mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477,682 to 479,259
12933
mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479,407 to 483,783
12934
mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484,052 to 485,585
12935
mRNA_4568: 12936 - Hypothetical Protein, at 485,805 to 489,325
12936
mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489,481 to 490,955
12937
Group
Condition
mRNA
_4565
mRNA
_4566
mRNA
_4567
mRNA
_4568
mRNA
_4569
12933
12934
12935
12936
12937
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.1
-0.1
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.5
-0.7
+0.1
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.1
-0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.7
-0.1
-0.0
-0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.0
-0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.1
+0.4
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
+0.2
-0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
+0.7
-0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.3
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.3
-0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.2
-0.2
+0.0
growth on ypd
YPD
-0.0
+0.1
+0.1
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
+0.2
+1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.3
-0.1
+1.7
auxotrophy
Dropout Complete
+0.1
+0.4
+0.1
-0.3
+0.9
auxotrophy
YNB Glucose
-0.1
+0.3
+0.4
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.3
+0.1
+1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.4
-0.1
+1.0
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