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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12937 and 12938 are separated by 217 nucleotides
12938 and 12939 are separated by 1038 nucleotides
12939 and 12940 are separated by 111 nucleotides
12940 and 12941 are separated by 123 nucleotides
mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489,481 to 490,955
12937
mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491,173 to 492,372
12938
mRNA_4571: 12939 - KOG4419 5' nucleotidase, at 493,411 to 495,654
12939
mRNA_4572: 12940 - K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1, at 495,766 to 497,109
12940
mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989
12941
Group
Condition
mRNA
_4569
mRNA
_4570
mRNA
_4571
mRNA
_4572
mRNA
_4573
12937
12938
12939
12940
12941
growth on oleic acid
YNB Glucose
-1.2
-0.8
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.4
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.9
+0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
-0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
-1.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-1.2
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.5
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.7
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.6
-0.8
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.7
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.7
-0.4
N.D.
N.D.
growth on ypd
YPD
+0.4
-0.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.7
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.7
-0.4
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.0
-0.8
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.9
-0.7
+0.8
N.D.
N.D.
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