Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12938 and 12939 are separated by 1038 nucleotides12939 and 12940 are separated by 111 nucleotides12940 and 12941 are separated by 123 nucleotides12941 and 12942 are separated by 54 nucleotides mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491,173 to 492,372 12938 mRNA_4571: 12939 - KOG4419 5' nucleotidase, at 493,411 to 495,654 12939 mRNA_4572: 12940 - K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1, at 495,766 to 497,109 12940 mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989 12941 mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499,044 to 500,144 12942
Group Condition mRNA_4570 mRNA_4571 mRNA_4572 mRNA_4573 mRNA_4574
12938 12939 12940 12941 12942
growth on ricinoleic acid YNB Glucose -1.1 -0.1 N.D. N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.6 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.6 N.D. N.D. N.D.
growth on oleic acid YNB Glucose -0.8 +0.0 N.D. N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.7 -0.1 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -1.2 +0.5 N.D. N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.0 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 +0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose -0.8 +0.5 N.D. N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.2 -0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.3 N.D. N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 +0.2 N.D. N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.5 +0.3 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.8 +0.7 N.D. N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.2 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.7 -0.7 N.D. N.D. N.D.
auxotrophy Dropout Complete -0.7 +0.8 N.D. N.D. N.D.
growth on ypd YPD -0.3 +0.5 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.7 -0.4 N.D. N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.0 N.D. N.D. N.D.
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