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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12944 and 12945 are separated by 751 nucleotides
12945 and 12946 are separated by 680 nucleotides
12946 and 12947 are separated by 1508 nucleotides
12947 and 12948 are separated by 1220 nucleotides
mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502,452 to 503,977
12944
mRNA_4577: 12945 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 504,729 to 505,838
12945
mRNA_4578: 12946 - Hypothetical Protein, at 506,519 to 507,162
12946
mRNA_4579: 12947 - KOG1399 Flavin-containing monooxygenase, at 508,671 to 511,163
12947
mRNA_4580: 12948 - Hypothetical Protein, at 512,384 to 513,483
12948
Group
Condition
mRNA
_4576
mRNA
_4577
mRNA
_4578
mRNA
_4579
mRNA
_4580
12944
12945
12946
12947
12948
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-1.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
N.D.
-0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
N.D.
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose
N.D.
-0.1
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
N.D.
-0.2
+0.5
auxotrophy
Dropout Complete
N.D.
-0.2
N.D.
-0.0
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.5
+0.1
growth on ypd
YPD
N.D.
+0.3
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
N.D.
+0.2
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.4
+0.6
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