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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12947 and 12948 are separated by 1220 nucleotides
12948 and 12949 are separated by 265 nucleotides
12949 and 12950 are separated by 497 nucleotides
12950 and 12951 are separated by 459 nucleotides
mRNA_4579: 12947 - KOG1399 Flavin-containing monooxygenase, at 508,671 to 511,163
12947
mRNA_4580: 12948 - Hypothetical Protein, at 512,384 to 513,483
12948
mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513,749 to 516,613
12949
mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517,111 to 519,102
12950
mRNA_4583: 12951 - Hypothetical Protein, at 519,562 to 522,262
12951
Group
Condition
mRNA
_4579
mRNA
_4580
mRNA
_4581
mRNA
_4582
mRNA
_4583
12947
12948
12949
12950
12951
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
N.D.
+0.1
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-0.3
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
N.D.
-0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
N.D.
-0.0
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
N.D.
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.0
N.D.
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
N.D.
+0.0
-0.4
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-0.0
+0.1
growth on ypd
YPD
+0.2
+0.1
N.D.
+0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
N.D.
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
+0.1
+0.1
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
N.D.
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.6
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.7
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
-0.0
+0.7
N.D.
+0.3
-0.2
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