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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12949 and 12950 are separated by 497 nucleotides
12950 and 12951 are separated by 459 nucleotides
12951 and 12952 are separated by 198 nucleotides
12952 and 12953 are separated by 179 nucleotides
mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513,749 to 516,613
12949
mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517,111 to 519,102
12950
mRNA_4583: 12951 - Hypothetical Protein, at 519,562 to 522,262
12951
mRNA_4584: 12952 - KOG2217 U4/U6.U5 snRNP associated protein, at 522,461 to 526,317
12952
mRNA_4585: 12953 - SUPERFAMILY--SSF103473, at 526,497 to 528,503
12953
Group
Condition
mRNA
_4581
mRNA
_4582
mRNA
_4583
mRNA
_4584
mRNA
_4585
12949
12950
12951
12952
12953
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.7
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.6
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-1.0
-0.4
+0.2
growth on ypd
YPD
N.D.
+0.2
-0.7
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.1
-0.6
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.4
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.3
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.4
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.2
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.8
-0.1
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.4
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.5
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.3
+0.2
+0.0
auxotrophy
Dropout Complete
N.D.
+0.3
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
N.D.
+0.2
-0.2
+0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.1
+0.3
+0.3
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