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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12951 and 12952 are separated by 198 nucleotides
12952 and 12953 are separated by 179 nucleotides
12953 and 12954 are separated by 233 nucleotides
12954 and 12955 are separated by 1052 nucleotides
mRNA_4583: 12951 - Hypothetical Protein, at 519,562 to 522,262
12951
mRNA_4584: 12952 - KOG2217 U4/U6.U5 snRNP associated protein, at 522,461 to 526,317
12952
mRNA_4585: 12953 - SUPERFAMILY--SSF103473, at 526,497 to 528,503
12953
mRNA_4586: 12954 - K16075 MRS2, MFM1 magnesium transporter, at 528,737 to 530,080
12954
mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604
12955
Group
Condition
mRNA
_4583
mRNA
_4584
mRNA
_4585
mRNA
_4586
mRNA
_4587
12951
12952
12953
12954
12955
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.4
+0.2
-0.6
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.1
+0.5
-0.6
-1.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
-0.2
-0.3
-0.6
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.2
-0.4
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.6
-0.4
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
-0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
-0.2
-0.3
+0.2
growth on ypd
YPD
-0.7
-0.4
-0.2
+0.0
+0.2
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.3
-0.6
-0.7
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
+0.7
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
+0.0
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.3
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.2
-0.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.1
+0.2
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
+0.0
-0.1
+0.3
auxotrophy
YNB Glucose
-0.2
+0.5
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
-0.0
-0.1
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