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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12952 and 12953 are separated by 179 nucleotides
12953 and 12954 are separated by 233 nucleotides
12954 and 12955 are separated by 1052 nucleotides
12955 and 12956 are separated by 902 nucleotides
mRNA_4584: 12952 - KOG2217 U4/U6.U5 snRNP associated protein, at 522,461 to 526,317
12952
mRNA_4585: 12953 - SUPERFAMILY--SSF103473, at 526,497 to 528,503
12953
mRNA_4586: 12954 - K16075 MRS2, MFM1 magnesium transporter, at 528,737 to 530,080
12954
mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604
12955
mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207
12956
Group
Condition
mRNA
_4584
mRNA
_4585
mRNA
_4586
mRNA
_4587
mRNA
_4588
12952
12953
12954
12955
12956
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
-0.6
-1.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.5
-0.6
-1.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.4
-0.2
-0.4
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.4
-1.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.3
-0.6
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
-0.3
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
-0.2
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
-0.6
-0.7
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.3
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.4
-0.0
-0.1
growth on ypd
YPD
-0.4
-0.2
+0.0
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.6
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.7
-0.2
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.0
-0.1
-0.0
auxotrophy
YNB Glucose
+0.5
+0.2
-0.2
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.2
+0.1
+0.2
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