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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12953 and 12954 are separated by 233 nucleotides
12954 and 12955 are separated by 1052 nucleotides
12955 and 12956 are separated by 902 nucleotides
12956 and 12957 are separated by 268 nucleotides
mRNA_4585: 12953 - SUPERFAMILY--SSF103473, at 526,497 to 528,503
12953
mRNA_4586: 12954 - K16075 MRS2, MFM1 magnesium transporter, at 528,737 to 530,080
12954
mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604
12955
mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207
12956
mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079
12957
Group
Condition
mRNA
_4585
mRNA
_4586
mRNA
_4587
mRNA
_4588
mRNA
_4589
12953
12954
12955
12956
12957
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.6
-1.7
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.6
-1.5
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
-1.0
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
-0.6
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.6
-0.7
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.3
-0.4
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
-0.2
-0.4
+0.1
N.D.
growth on ypd
YPD
-0.2
+0.0
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.1
-0.0
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.1
+0.2
N.D.
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