Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12954 and 12955 are separated by 1052 nucleotides12955 and 12956 are separated by 902 nucleotides12956 and 12957 are separated by 268 nucleotides12957 and 12958 are separated by 973 nucleotides mRNA_4586: 12954 - K16075 MRS2, MFM1 magnesium transporter, at 528,737 to 530,080 12954 mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604 12955 mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207 12956 mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079 12957 mRNA_4590: 12958 - Hypothetical Protein, at 537,053 to 538,336 12958
Group Condition mRNA_4586 mRNA_4587 mRNA_4588 mRNA_4589 mRNA_4590
12954 12955 12956 12957 12958
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 -1.5 -0.2 N.D. -0.8
growth on ricinoleic acid YNB Methylricinoleic Acid -0.6 -1.7 -0.4 N.D. -0.3
growth on oleic acid YNB Oleic Acid -0.4 -1.0 -0.4 N.D. -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.4 -0.3 N.D. -0.7
growth on ricinoleic acid YNB Glucose -0.2 -0.4 +0.1 N.D. -1.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.6 -0.3 N.D. -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.2 -0.1 N.D. -0.9
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.3 +0.2 N.D. -0.9
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.7 +0.4 N.D. -0.1
auxotrophy YNB Glucose 75mM Arginine -0.4 -0.0 -0.1 N.D. -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.2 -0.1 N.D. -0.5
growth on oleic acid YNB Glucose +0.1 -0.3 -0.3 N.D. -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.2 +0.2 N.D. -0.3
auxotrophy YNB Glucose 75mM Methionine -0.6 +0.1 -0.1 N.D. -0.1
growth on ypd YPD +0.0 +0.2 +0.1 N.D. -0.9
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.4 +0.0 N.D. -0.5
auxotrophy YNB Glucose -0.2 -0.1 -0.1 N.D. -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.1 -0.0 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.3 +0.1 N.D. +0.2
auxotrophy Dropout Complete -0.1 +0.3 -0.0 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.1 +0.2 N.D. -0.0
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