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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12955 and 12956 are separated by 902 nucleotides
12956 and 12957 are separated by 268 nucleotides
12957 and 12958 are separated by 973 nucleotides
12958 and 12959 are separated by 267 nucleotides
mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604
12955
mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207
12956
mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079
12957
mRNA_4590: 12958 - Hypothetical Protein, at 537,053 to 538,336
12958
mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538,604 to 541,004
12959
Group
Condition
mRNA
_4587
mRNA
_4588
mRNA
_4589
mRNA
_4590
mRNA
_4591
12955
12956
12957
12958
12959
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
-0.2
N.D.
-0.8
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
-0.4
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-1.0
-0.4
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
N.D.
-0.7
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
N.D.
-1.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.3
N.D.
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.3
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.0
N.D.
-0.5
-0.0
growth on ypd
YPD
+0.2
+0.1
N.D.
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
-0.9
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.4
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
N.D.
-0.9
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
N.D.
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
-0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
-0.0
+0.3
auxotrophy
Dropout Complete
+0.3
-0.0
N.D.
+0.1
+0.3
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