Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12956 and 12957 are separated by 268 nucleotides
12957 and 12958 are separated by 973 nucleotides
12958 and 12959 are separated by 267 nucleotides
12959 and 12960 are separated by 510 nucleotides
mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207
12956
mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079
12957
mRNA_4590: 12958 - Hypothetical Protein, at 537,053 to 538,336
12958
mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538,604 to 541,004
12959
mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541,515 to 545,296
12960
Group
Condition
mRNA
_4588
mRNA
_4589
mRNA
_4590
mRNA
_4591
mRNA
_4592
12956
12957
12958
12959
12960
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.7
-0.3
-1.9
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-1.0
+0.2
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.2
-0.0
-2.4
auxotrophy
Dropout Complete
-0.0
N.D.
+0.1
+0.3
-2.4
auxotrophy
YNB Glucose
-0.1
N.D.
-0.1
+0.2
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.3
+0.1
-1.7
growth on ypd
YPD
+0.1
N.D.
-0.9
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.8
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
+0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.2
+0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.9
+0.4
-0.8
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.1
-0.3
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
-0.3
-0.2
+1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.5
+0.3
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.9
+0.2
+1.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.2
+1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.5
-0.0
+1.8
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.0
+0.3
+1.8
remove
mRNA_4588
plot
remove
mRNA_4589
plot
remove
mRNA_4590
remove
mRNA_4591
plot
remove
mRNA_4592
plot