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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12959 and 12960 are separated by 510 nucleotides
12960 and 12961 are separated by 820 nucleotides
12961 and 12962 are separated by 114 nucleotides
12962 and 12963 are separated by 556 nucleotides
mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538,604 to 541,004
12959
mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541,515 to 545,296
12960
mRNA_4593: 12961 - K05286 PIGB phosphatidylinositol glycan, class B, at 546,117 to 548,213
12961
mRNA_4594: 12962 - K19589 N6AMT1 release factor glutamine methyltransferase, at 548,328 to 549,291
12962
mRNA_4595: 12963 - KOG2186 Cell growth-regulating nucleolar protein, at 549,848 to 550,552
12963
Group
Condition
mRNA
_4591
mRNA
_4592
mRNA
_4593
mRNA
_4594
mRNA
_4595
12959
12960
12961
12962
12963
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.7
N.D.
N.D.
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.9
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-2.4
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.8
N.D.
N.D.
-1.3
auxotrophy
Dropout Complete
+0.3
-2.4
N.D.
N.D.
+0.8
auxotrophy
YNB Glucose
+0.2
-2.1
N.D.
N.D.
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.8
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.5
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.1
N.D.
N.D.
+0.7
growth on ypd
YPD
-0.2
-0.4
N.D.
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.9
N.D.
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.2
-2.0
N.D.
N.D.
+1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.7
N.D.
N.D.
-1.7
ypd buoyancy
40 hrs High Buoyancy
+0.3
+1.8
N.D.
N.D.
-1.4
growth on oleic acid
YNB Oleic Acid
-0.2
+1.3
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
N.D.
N.D.
+1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
N.D.
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+1.0
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+1.5
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+1.8
N.D.
N.D.
+0.1
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