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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12970 and 12971 are separated by 406 nucleotides
12971 and 12972 are separated by 600 nucleotides
12972 and 12973 are separated by 238 nucleotides
12973 and 12974 are separated by 261 nucleotides
mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561,866 to 562,949
12970
mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563,356 to 565,108
12971
mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987
12972
mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633
12973
mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183
12974
Group
Condition
mRNA
_4602
mRNA
_4603
mRNA
_4604
mRNA
_4605
mRNA
_4606
12970
12971
12972
12973
12974
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-1.3
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.6
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
N.D.
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.5
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
N.D.
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
N.D.
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.6
+0.1
N.D.
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
+0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
N.D.
+0.1
+0.1
growth on ypd
YPD
+0.6
+0.0
N.D.
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
N.D.
+0.8
-0.0
auxotrophy
Dropout Complete
+0.1
+0.1
N.D.
+0.8
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
N.D.
+0.6
+0.3
auxotrophy
YNB Glucose
+0.2
+0.0
N.D.
+0.9
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
N.D.
+1.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
N.D.
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.8
N.D.
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.7
N.D.
+0.7
+0.2
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