Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12971 and 12972 are separated by 600 nucleotides12972 and 12973 are separated by 238 nucleotides12973 and 12974 are separated by 261 nucleotides12974 and 12975 are separated by 84 nucleotides mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563,356 to 565,108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987 12972 mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633 12973 mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183 12974 mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571,268 to 571,973 12975
Group Condition mRNA_4603 mRNA_4604 mRNA_4605 mRNA_4606 mRNA_4607
12971 12972 12973 12974 12975
growth on ricinoleic acid YNB Ricinoleic Acid -1.3 N.D. +0.2 -0.0 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 N.D. -0.1 +0.1 -0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.5 N.D. -0.4 +0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.6 N.D. +0.1 +0.5 -0.4
growth on oleic acid YNB Glucose +0.1 N.D. +0.4 +0.3 -1.3
growth on oleic acid YNB Oleic Acid -0.0 N.D. -0.0 +0.1 -0.6
growth on ypd YPD +0.0 N.D. +0.4 -0.5 -0.3
auxotrophy YNB Glucose 75mM Arginine +0.0 N.D. +0.8 -0.0 -1.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. +0.1 +0.1 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 N.D. -0.2 -0.0 +0.9
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. +0.1 +0.2 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. -0.2 +0.2 +0.3
growth on ricinoleic acid YNB Glucose -0.1 N.D. +0.1 +0.2 +0.1
auxotrophy Dropout Complete +0.1 N.D. +0.8 +0.2 -0.8
auxotrophy YNB Glucose 75mM Methionine +0.2 N.D. +1.0 +0.2 -0.9
auxotrophy YNB Glucose +0.0 N.D. +0.9 +0.3 -0.7
ypd buoyancy 40 hrs Low Buoyancy -0.1 N.D. +0.4 -0.2 +0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 N.D. +0.4 +0.4 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.7 N.D. +0.7 +0.2 -0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 N.D. +0.6 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.8 N.D. +0.5 +0.3 -0.2
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