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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12972 and 12973 are separated by 238 nucleotides
12973 and 12974 are separated by 261 nucleotides
12974 and 12975 are separated by 84 nucleotides
12975 and 12976 are separated by 591 nucleotides
mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987
12972
mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633
12973
mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183
12974
mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571,268 to 571,973
12975
mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380
12976
Group
Condition
mRNA
_4604
mRNA
_4605
mRNA
_4606
mRNA
_4607
mRNA
_4608
12972
12973
12974
12975
12976
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.1
-0.4
-0.6
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.3
-1.3
-0.0
growth on ypd
YPD
N.D.
+0.4
-0.5
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.0
-0.7
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
-0.6
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.2
-0.7
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.5
-0.4
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.8
-0.0
-1.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.0
+0.2
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.4
-0.7
+0.0
auxotrophy
Dropout Complete
N.D.
+0.8
+0.2
-0.8
+0.1
auxotrophy
YNB Glucose
N.D.
+0.9
+0.3
-0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-0.2
+0.6
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.2
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.0
+0.9
+0.9
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