Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12973 and 12974 are separated by 261 nucleotides12974 and 12975 are separated by 84 nucleotides12975 and 12976 are separated by 591 nucleotides12976 and 12977 are separated by 350 nucleotides mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568,226 to 569,633 12973 mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183 12974 mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571,268 to 571,973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281 12977
Group Condition mRNA_4605 mRNA_4606 mRNA_4607 mRNA_4608 mRNA_4609
12973 12974 12975 12976 12977
growth on oleic acid YNB Glucose +0.4 +0.3 -1.3 -0.0 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.7 +0.2 -0.7 -0.5 -0.5
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.1 -0.4 -0.6 -0.0
growth on ypd YPD +0.4 -0.5 -0.3 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.1 +0.1 -0.2 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.0 -0.7 -0.0 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.5 -0.4 -0.4 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.1 -0.6 +0.2 -0.0
auxotrophy Dropout Complete +0.8 +0.2 -0.8 +0.1 -0.7
growth on oleic acid YNB Oleic Acid -0.0 +0.1 -0.6 +0.3 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.8 -0.0 -1.1 +0.3 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 +0.4 -0.7 +0.0 -0.1
auxotrophy YNB Glucose +0.9 +0.3 -0.7 +0.1 -0.4
auxotrophy YNB Glucose 75mM Methionine +1.0 +0.2 -0.9 -0.2 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.2 +0.1 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 +0.3 -0.1 +0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.2 +0.3 +0.6 -0.3
growth on ricinoleic acid YNB Glucose +0.1 +0.2 +0.1 +0.5 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 +0.3 -0.2 +0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.4 -0.2 +0.6 -0.1 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.0 +0.9 +0.9 +0.3
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