Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12974 and 12975 are separated by 84 nucleotides
12975 and 12976 are separated by 591 nucleotides
12976 and 12977 are separated by 350 nucleotides
12977 and 12978 are separated by 1223 nucleotides
mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569,895 to 571,183
12974
mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571,268 to 571,973
12975
mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380
12976
mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281
12977
mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784
12978
Group
Condition
mRNA
_4606
mRNA
_4607
mRNA
_4608
mRNA
_4609
mRNA
_4610
12974
12975
12976
12977
12978
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.7
-0.5
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.3
-1.3
-0.0
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.6
-0.0
-0.3
auxotrophy
Dropout Complete
+0.2
-0.8
+0.1
-0.7
+0.0
growth on ypd
YPD
-0.5
-0.3
-0.2
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.4
-0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-1.1
+0.3
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.2
-0.4
-0.3
auxotrophy
YNB Glucose
+0.3
-0.7
+0.1
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.9
-0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.7
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.7
-0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.1
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.6
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
+0.2
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.2
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.6
-0.1
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.6
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.5
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.9
+0.9
+0.3
-0.7
remove
mRNA_4606
plot
remove
mRNA_4607
plot
remove
mRNA_4608
remove
mRNA_4609
plot
remove
mRNA_4610
plot