Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12976 and 12977 are separated by 350 nucleotides12977 and 12978 are separated by 1223 nucleotides12978 and 12979 are separated by 325 nucleotides12979 and 12980 are separated by 6200 nucleotides mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281 12977 mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880 12979 mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594,081 to 594,633 12980
Group Condition mRNA_4608 mRNA_4609 mRNA_4610 mRNA_4611 mRNA_4612
12976 12977 12978 12979 12980
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.5 +0.0 -0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.4 -0.3 -0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.2 -0.2 +0.1 N.D.
auxotrophy Dropout Complete +0.1 -0.7 +0.0 -0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 -0.0 -0.3 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.3 +0.0 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.1 -0.3 -0.1 N.D.
auxotrophy YNB Glucose +0.1 -0.4 +0.0 -0.1 N.D.
growth on oleic acid YNB Glucose -0.0 -0.3 +0.0 +0.0 N.D.
growth on ypd YPD -0.2 -0.2 +0.2 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.0 +0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.1 -0.1 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.1 +0.1 -0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.2 +0.0 -0.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 +0.0 +0.4 -0.2 N.D.
growth on oleic acid YNB Oleic Acid +0.3 +0.1 +0.1 -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.0 +0.2 +0.0 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.0 +0.4 -0.2 N.D.
growth on ricinoleic acid YNB Glucose +0.5 -0.2 +0.3 -0.2 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.9 +0.3 -0.7 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.6 -0.3 +0.3 -0.0 N.D.
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