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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12976 and 12977 are separated by 350 nucleotides
12977 and 12978 are separated by 1223 nucleotides
12978 and 12979 are separated by 325 nucleotides
12979 and 12980 are separated by 6200 nucleotides
mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572,565 to 575,380
12976
mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281
12977
mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784
12978
mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880
12979
mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594,081 to 594,633
12980
Group
Condition
mRNA
_4608
mRNA
_4609
mRNA
_4610
mRNA
_4611
mRNA
_4612
12976
12977
12978
12979
12980
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.3
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
-0.2
+0.1
N.D.
auxotrophy
Dropout Complete
+0.1
-0.7
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.0
-0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.3
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
-0.4
+0.0
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.0
+0.0
N.D.
growth on ypd
YPD
-0.2
-0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
+0.4
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
+0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
+0.3
-0.7
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.3
+0.3
-0.0
N.D.
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