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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12977 and 12978 are separated by 1223 nucleotides
12978 and 12979 are separated by 325 nucleotides
12979 and 12980 are separated by 6200 nucleotides
12980 and 12981 are separated by 3557 nucleotides
mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575,731 to 577,281
12977
mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784
12978
mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880
12979
mRNA_4612: 12980 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 594,081 to 594,633
12980
mRNA_4613: 12981 - BLAST phospholipid-translocating ATPase [Microbotryum lychn..., at 598,191 to 598,847
12981
Group
Condition
mRNA
_4609
mRNA
_4610
mRNA
_4611
mRNA
_4612
mRNA
_4613
12977
12978
12979
12980
12981
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.7
-0.1
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
-0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
-0.3
N.D.
+0.2
auxotrophy
Dropout Complete
-0.7
+0.0
-0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
-0.0
N.D.
-0.2
auxotrophy
YNB Glucose
-0.4
+0.0
-0.1
N.D.
+0.2
growth on ypd
YPD
-0.2
+0.2
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
+0.1
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
-0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
+0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
-0.2
N.D.
+0.4
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