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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12981 and 12982 are separated by 1049 nucleotides
12982 and 12983 are separated by 2681 nucleotides
12983 and 12984 are separated by 923 nucleotides
12984 and 12985 are separated by 669 nucleotides
mRNA_4613: 12981 - BLAST phospholipid-translocating ATPase [Microbotryum lychn..., at 598,191 to 598,847
12981
mRNA_4614: 12982 - BLAST B-cell lymphoma/leukemia 11B [Orchesella cincta], at 599,897 to 601,386
12982
mRNA_4615: 12983 - Hypothetical Protein, at 604,068 to 604,303
12983
mRNA_4616: 12984 - Hypothetical Protein, at 605,227 to 605,994
12984
mRNA_4617: 12985 - Hypothetical Protein, at 606,664 to 607,161
12985
Group
Condition
mRNA
_4613
mRNA
_4614
mRNA
_4615
mRNA
_4616
mRNA
_4617
12981
12982
12983
12984
12985
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.8
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.7
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.4
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.5
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
N.D.
N.D.
-0.0
growth on ypd
YPD
-0.1
+0.3
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.7
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
-0.0
+0.1
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.4
+0.4
N.D.
N.D.
+0.1
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