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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12987 and 12988 are separated by 1434 nucleotides
12988 and 12989 are separated by 124 nucleotides
12989 and 12990 are separated by 324 nucleotides
12990 and 12991 are separated by 373 nucleotides
mRNA_4619: 12987 - KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1, at 615,646 to 616,230
12987
mRNA_4620: 12988 - K05293 PIGU phosphatidylinositol glycan, class U, at 617,665 to 619,015
12988
mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619,140 to 621,311
12989
mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621,636 to 624,863
12990
mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203
12991
Group
Condition
mRNA
_4619
mRNA
_4620
mRNA
_4621
mRNA
_4622
mRNA
_4623
12987
12988
12989
12990
12991
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.6
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.7
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.0
+0.0
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
+0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.3
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.4
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.9
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.3
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.4
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
+0.6
-0.0
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