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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12988 and 12989 are separated by 124 nucleotides
12989 and 12990 are separated by 324 nucleotides
12990 and 12991 are separated by 373 nucleotides
12991 and 12992 are separated by 297 nucleotides
mRNA_4620: 12988 - K05293 PIGU phosphatidylinositol glycan, class U, at 617,665 to 619,015
12988
mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619,140 to 621,311
12989
mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621,636 to 624,863
12990
mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203
12991
mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051
12992
Group
Condition
mRNA
_4620
mRNA
_4621
mRNA
_4622
mRNA
_4623
mRNA
_4624
12988
12989
12990
12991
12992
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.8
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.0
+0.3
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.4
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.7
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
N.D.
-0.4
+0.4
-0.6
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.5
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.3
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.3
+0.2
-0.1
growth on ypd
YPD
N.D.
+0.9
-0.7
-0.2
+0.4
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.3
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
+0.5
-0.1
+0.6
auxotrophy
YNB Glucose
N.D.
-0.2
+0.4
+0.0
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.6
-0.0
+0.4
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