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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12989 and 12990 are separated by 324 nucleotides
12990 and 12991 are separated by 373 nucleotides
12991 and 12992 are separated by 297 nucleotides
12992 and 12993 are separated by 300 nucleotides
mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619,140 to 621,311
12989
mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621,636 to 624,863
12990
mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625,237 to 628,203
12991
mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051
12992
mRNA_4625: 12993 - K09660 MPDU1 mannose-P-dolichol utilization defect 1, at 629,352 to 630,709
12993
Group
Condition
mRNA
_4621
mRNA
_4622
mRNA
_4623
mRNA
_4624
mRNA
_4625
12989
12990
12991
12992
12993
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.8
+0.3
-0.5
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.0
+0.3
-0.7
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
+0.1
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.3
-0.1
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.7
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.1
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
-0.1
-0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.5
-0.1
-0.2
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
+0.5
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.4
+0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
+0.2
-0.1
-0.3
auxotrophy
Dropout Complete
-0.4
+0.4
-0.6
+0.7
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.3
+0.3
-0.1
+0.1
growth on ypd
YPD
+0.9
-0.7
-0.2
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.2
+0.1
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.5
-0.1
+0.6
+0.2
auxotrophy
YNB Glucose
-0.2
+0.4
+0.0
+0.7
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.6
-0.0
+0.4
+0.1
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