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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12992 and 12993 are separated by 300 nucleotides
12993 and 12994 are separated by 246 nucleotides
12994 and 12995 are separated by 281 nucleotides
12995 and 12996 are separated by 490 nucleotides
mRNA_4624: 12992 - Hypothetical Protein, at 628,501 to 629,051
12992
mRNA_4625: 12993 - K09660 MPDU1 mannose-P-dolichol utilization defect 1, at 629,352 to 630,709
12993
mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630,956 to 632,424
12994
mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632,706 to 638,769
12995
mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639,260 to 641,629
12996
Group
Condition
mRNA
_4624
mRNA
_4625
mRNA
_4626
mRNA
_4627
mRNA
_4628
12992
12993
12994
12995
12996
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-1.1
+0.1
-1.5
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.6
+0.2
-0.0
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.8
+0.1
-1.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
-1.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
+0.1
-0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.5
-0.2
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
+0.0
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.3
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.7
+0.1
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
+0.1
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
-0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.2
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
-0.0
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.5
+0.3
-0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.5
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.2
+0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.2
-0.1
-0.2
+0.3
auxotrophy
YNB Glucose
+0.7
+0.2
+0.1
-0.3
+0.1
auxotrophy
Dropout Complete
+0.7
+0.3
-0.0
-0.1
+0.5
growth on ypd
YPD
+0.4
+0.2
-0.5
+0.2
+1.3
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