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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12997 and 12998 are separated by 1277 nucleotides
12998 and 12999 are separated by 784 nucleotides
12999 and 13000 are separated by 342 nucleotides
13000 and 13001 are separated by 99 nucleotides
mRNA_4629: 12997 - K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14, at 642,577 to 644,729
12997
mRNA_4630: 12998 - Hypothetical Protein, at 646,007 to 648,438
12998
mRNA_4631: 12999 - SUPERFAMILY--SSF103506, at 649,223 to 651,329
12999
mRNA_4632: 13000 - K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2, at 651,672 to 652,888
13000
mRNA_4633: 13001 - K00521 E1.16.1.7 ferric-chelate reductase, at 652,988 to 655,146
13001
Group
Condition
mRNA
_4629
mRNA
_4630
mRNA
_4631
mRNA
_4632
mRNA
_4633
12997
12998
12999
13000
13001
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.6
-0.5
-0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
-0.2
-0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
-0.7
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.6
+0.1
+0.1
+0.6
-0.2
growth on oleic acid
YNB Glucose
+0.0
+0.0
-0.1
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.2
-0.5
-0.5
auxotrophy
Dropout Complete
-1.1
-0.2
+0.2
+0.2
+0.1
growth on ypd
YPD
-0.7
-0.2
-0.0
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.3
-0.4
-0.1
auxotrophy
YNB Glucose
-0.8
-0.2
+0.2
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.0
+0.0
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.1
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.1
+0.0
+1.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
-0.2
+0.9
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
+0.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.4
+0.3
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
+0.5
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.4
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.5
+0.5
+0.8
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+0.5
+0.9
+0.3
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