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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13000 and 13001 are separated by 99 nucleotides
13001 and 13002 are separated by 1643 nucleotides
13002 and 13003 are separated by 237 nucleotides
13003 and 13004 are separated by 167 nucleotides
mRNA_4632: 13000 - K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2, at 651,672 to 652,888
13000
mRNA_4633: 13001 - K00521 E1.16.1.7 ferric-chelate reductase, at 652,988 to 655,146
13001
mRNA_4634: 13002 - K00873 PK, pyk pyruvate kinase, at 656,790 to 659,276
13002
mRNA_4635: 13003 - Hypothetical Protein, at 659,514 to 660,743
13003
mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323
13004
Group
Condition
mRNA
_4632
mRNA
_4633
mRNA
_4634
mRNA
_4635
mRNA
_4636
13000
13001
13002
13003
13004
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
N.D.
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.5
N.D.
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
N.D.
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.5
-0.3
N.D.
+0.5
+0.5
growth on ypd
YPD
+0.1
+0.3
N.D.
+0.4
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.2
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
N.D.
-0.1
+0.1
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.0
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose
+0.7
-0.1
N.D.
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.6
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.3
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.1
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
+0.4
N.D.
+0.2
-0.1
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