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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13001 and 13002 are separated by 1643 nucleotides
13002 and 13003 are separated by 237 nucleotides
13003 and 13004 are separated by 167 nucleotides
13004 and 13005 are separated by 440 nucleotides
mRNA_4633: 13001 - K00521 E1.16.1.7 ferric-chelate reductase, at 652,988 to 655,146
13001
mRNA_4634: 13002 - K00873 PK, pyk pyruvate kinase, at 656,790 to 659,276
13002
mRNA_4635: 13003 - Hypothetical Protein, at 659,514 to 660,743
13003
mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323
13004
mRNA_4637: 13005 - Hypothetical Protein, at 661,764 to 663,098
13005
Group
Condition
mRNA
_4633
mRNA
_4634
mRNA
_4635
mRNA
_4636
mRNA
_4637
13001
13002
13003
13004
13005
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.3
-0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.0
-0.1
-0.0
growth on ypd
YPD
+0.3
N.D.
+0.4
-0.5
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.3
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.4
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
+0.0
-0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
+0.2
+0.8
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.2
+0.7
growth on oleic acid
YNB Oleic Acid
-0.5
N.D.
+0.4
+0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.1
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.7
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.5
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.2
-0.1
+0.3
auxotrophy
Dropout Complete
+0.1
N.D.
-0.1
+0.2
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.0
+0.3
+0.8
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