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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13004 and 13005 are separated by 440 nucleotides
13005 and 13006 are separated by 93 nucleotides
13006 and 13007 are separated by 130 nucleotides
13007 and 13008 are separated by 266 nucleotides
mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323
13004
mRNA_4637: 13005 - Hypothetical Protein, at 661,764 to 663,098
13005
mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663,192 to 664,874
13006
mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665,005 to 666,466
13007
mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666,733 to 668,799
13008
Group
Condition
mRNA
_4636
mRNA
_4637
mRNA
_4638
mRNA
_4639
mRNA
_4640
13004
13005
13006
13007
13008
growth on ricinoleic acid
YNB Glucose
-0.4
+0.0
-0.4
-0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.6
+0.3
-0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.1
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
-0.4
-0.5
-0.2
growth on ypd
YPD
-0.5
-0.4
-0.1
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
+0.1
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
+0.0
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
+0.2
+0.0
+0.0
auxotrophy
YNB Glucose
+0.2
+0.7
-0.1
+0.3
-0.4
auxotrophy
Dropout Complete
+0.2
+0.7
+0.1
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.5
+0.2
+0.3
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.2
+0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.3
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.8
+0.0
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.8
+0.0
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.2
+0.4
+0.0
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