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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13007 and 13008 are separated by 266 nucleotides
13008 and 13009 are separated by 393 nucleotides
13009 and 13010 are separated by 1059 nucleotides
13010 and 13011 are separated by 86 nucleotides
mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665,005 to 666,466
13007
mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666,733 to 668,799
13008
mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669,193 to 672,697
13009
mRNA_4642: 13010 - Hypothetical Protein, at 673,757 to 675,763
13010
mRNA_4643: 13011 - Hypothetical Protein, at 675,850 to 678,539
13011
Group
Condition
mRNA
_4639
mRNA
_4640
mRNA
_4641
mRNA
_4642
mRNA
_4643
13007
13008
13009
13010
13011
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-1.3
-0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
-1.5
-0.2
+0.0
auxotrophy
YNB Glucose
+0.3
-0.4
-1.6
-0.4
-0.2
auxotrophy
Dropout Complete
+0.0
-0.3
-1.5
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.6
-1.4
-0.7
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.7
-2.3
+1.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.4
-0.7
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-1.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
+0.4
-1.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-1.1
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-1.3
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.9
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.7
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.0
-1.5
+0.8
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-1.0
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.0
-0.0
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.5
+0.6
-0.1
growth on ypd
YPD
+0.4
-0.1
+0.7
-0.8
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.5
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.7
+0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
-0.5
-0.2
+0.5
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