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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13009 and 13010 are separated by 1059 nucleotides
13010 and 13011 are separated by 86 nucleotides
13011 and 13012 are separated by 944 nucleotides
13012 and 13013 are separated by 422 nucleotides
mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669,193 to 672,697
13009
mRNA_4642: 13010 - Hypothetical Protein, at 673,757 to 675,763
13010
mRNA_4643: 13011 - Hypothetical Protein, at 675,850 to 678,539
13011
mRNA_4644: 13012 - Hypothetical Protein, at 679,484 to 680,110
13012
mRNA_4645: 13013 - Hypothetical Protein, at 680,533 to 681,409
13013
Group
Condition
mRNA
_4641
mRNA
_4642
mRNA
_4643
mRNA
_4644
mRNA
_4645
13009
13010
13011
13012
13013
ypd buoyancy
40 hrs No Buoyancy Separation
-2.3
+1.4
+0.2
-3.1
+0.2
auxotrophy
YNB Glucose
-1.6
-0.4
-0.2
+0.0
-0.8
growth on ricinoleic acid
YNB Glucose
-1.5
-0.2
+0.0
-0.3
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.6
+0.1
+0.1
-1.0
auxotrophy
Dropout Complete
-1.5
-0.3
-0.2
+0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-0.7
+0.2
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.9
+0.1
-0.1
-1.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.1
+0.0
+0.6
-1.5
growth on oleic acid
YNB Glucose
-1.5
+0.8
-0.2
+0.0
-0.6
growth on oleic acid
YNB Oleic Acid
-1.1
+0.5
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-1.1
-0.2
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.3
+0.3
-0.0
-0.0
+0.2
growth on ypd
YPD
+0.7
-0.8
-0.2
+0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.7
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.5
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.7
+0.0
-0.6
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.4
-0.1
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.2
+0.5
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.6
-0.1
+0.9
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.1
-0.1
+1.7
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.6
-0.1
+1.1
-0.1
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