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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13012 and 13013 are separated by 422 nucleotides
13013 and 13014 are separated by 63 nucleotides
13014 and 13015 are separated by 415 nucleotides
13015 and 13016 are separated by 96 nucleotides
mRNA_4644: 13012 - Hypothetical Protein, at 679,484 to 680,110
13012
mRNA_4645: 13013 - Hypothetical Protein, at 680,533 to 681,409
13013
mRNA_4646: 13014 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 681,473 to 684,221
13014
mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684,637 to 688,290
13015
mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688,387 to 691,863
13016
Group
Condition
mRNA
_4644
mRNA
_4645
mRNA
_4646
mRNA
_4647
mRNA
_4648
13012
13013
13014
13015
13016
ypd buoyancy
40 hrs No Buoyancy Separation
-3.1
+0.2
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-1.2
-0.1
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.8
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-1.0
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-1.5
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.0
-0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.6
+0.1
N.D.
-0.2
auxotrophy
YNB Glucose
+0.0
-0.8
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.2
N.D.
-0.1
growth on ypd
YPD
+0.2
-0.6
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
-0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
N.D.
-0.0
auxotrophy
Dropout Complete
+0.0
-0.4
+0.3
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
+0.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
+0.2
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-0.3
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.1
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.7
+0.1
-0.4
N.D.
+0.2
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