Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 13014 and 13015 are separated by 415 nucleotides13015 and 13016 are separated by 96 nucleotides13016 and 13017 are separated by 208 nucleotides13017 and 13018 are separated by 273 nucleotides mRNA_4646: 13014 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 681,473 to 684,221 13014 mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684,637 to 688,290 13015 mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688,387 to 691,863 13016 mRNA_4649: 13017 - K03934 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, at 692,072 to 694,733 13017 mRNA_4650: 13018 - K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36, at 695,007 to 695,565 13018
Group Condition mRNA_4646 mRNA_4647 mRNA_4648 mRNA_4649 mRNA_4650
13014 13015 13016 13017 13018
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.0 N.D. -0.3
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.2 N.D. -0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 N.D. -0.2 N.D. -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 N.D. -0.1 N.D. +0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. -0.1 N.D. -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 N.D. -0.1 N.D. -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. -0.0 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. -0.0 N.D. -0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 N.D. +0.4 N.D. -0.7
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 N.D. -0.0 N.D. -0.0
growth on ypd YPD -0.0 N.D. -0.0 N.D. +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. +0.4 N.D. -0.1
growth on oleic acid YNB Oleic Acid +0.1 N.D. -0.0 N.D. +0.3
growth on oleic acid YNB Glucose +0.1 N.D. -0.2 N.D. +0.5
auxotrophy YNB Glucose +0.1 N.D. +0.1 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 N.D. +0.2 N.D. +0.6
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. -0.0 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 N.D. +0.2 N.D. +0.7
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.0 N.D. +0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 N.D. +0.1 N.D. +0.5
auxotrophy Dropout Complete +0.3 N.D. +0.0 N.D. +0.5
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