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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13018 and 13019 are separated by 439 nucleotides
13019 and 13020 are separated by 58 nucleotides
13020 and 13021 are separated by 1137 nucleotides
13021 and 13022 are separated by 149 nucleotides
mRNA_4650: 13018 - K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36, at 695,007 to 695,565
13018
mRNA_4651: 13019 - Hypothetical Protein, at 696,005 to 696,627
13019
mRNA_4652: 13020 - Hypothetical Protein, at 696,686 to 697,396
13020
mRNA_4653: 13021 - KOG1203 Predicted dehydrogenase, at 698,534 to 699,580
13021
mRNA_4654: 13022 - KOG4253 Tryptophan-rich basic nuclear protein, at 699,730 to 700,546
13022
Group
Condition
mRNA
_4650
mRNA
_4651
mRNA
_4652
mRNA
_4653
mRNA
_4654
13018
13019
13020
13021
13022
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.1
+0.0
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
-0.1
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
-0.0
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.2
-0.0
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.4
+0.3
-1.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.0
+0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.6
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
+0.4
+0.3
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.7
N.D.
-0.2
+0.2
-0.6
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.1
+0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.6
+0.1
-0.4
growth on oleic acid
YNB Glucose
+0.5
N.D.
-0.2
+0.2
-0.0
growth on ypd
YPD
+0.1
N.D.
+0.9
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
-0.1
+0.6
auxotrophy
Dropout Complete
+0.5
N.D.
+0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
-0.4
+0.3
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.1
+0.1
+1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
-0.2
+0.2
+1.7
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