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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13021 and 13022 are separated by 149 nucleotides
13022 and 13023 are separated by 221 nucleotides
13023 and 13024 are separated by 257 nucleotides
13024 and 13025 are separated by 345 nucleotides
mRNA_4653: 13021 - KOG1203 Predicted dehydrogenase, at 698,534 to 699,580
13021
mRNA_4654: 13022 - KOG4253 Tryptophan-rich basic nuclear protein, at 699,730 to 700,546
13022
mRNA_4655: 13023 - K03124 TFIIB, GTF2B, SUA7, tfb transcription initiation factor TFIIB, at 700,768 to 702,328
13023
mRNA_4656: 13024 - Hypothetical Protein, at 702,586 to 704,357
13024
mRNA_4657: 13025 - Hypothetical Protein, at 704,703 to 705,380
13025
Group
Condition
mRNA
_4653
mRNA
_4654
mRNA
_4655
mRNA
_4656
mRNA
_4657
13021
13022
13023
13024
13025
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.0
N.D.
-0.0
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-1.7
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.8
N.D.
+0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.6
N.D.
+0.3
-0.9
auxotrophy
YNB Glucose
+0.0
-0.5
N.D.
+0.2
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
N.D.
-0.1
-0.4
auxotrophy
Dropout Complete
+0.2
-0.0
N.D.
+0.2
-0.8
growth on ypd
YPD
-0.2
-0.3
N.D.
-0.0
+0.3
growth on oleic acid
YNB Glucose
+0.2
-0.0
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-1.0
N.D.
+0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
N.D.
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
N.D.
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.6
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.6
N.D.
+0.5
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.4
N.D.
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+1.2
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+1.7
N.D.
+0.0
+0.3
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