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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13025 and 13026 are separated by 444 nucleotides
13026 and 13027 are separated by 752 nucleotides
13027 and 13028 are separated by 385 nucleotides
13028 and 13029 are separated by 289 nucleotides
mRNA_4657: 13025 - Hypothetical Protein, at 704,703 to 705,380
13025
mRNA_4658: 13026 - Hypothetical Protein, at 705,825 to 708,792
13026
mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709,545 to 713,167
13027
mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713,553 to 716,343
13028
mRNA_4661: 13029 - K20180 VPS16 vacuolar protein sorting-associated protein 16, at 716,633 to 720,333
13029
Group
Condition
mRNA
_4657
mRNA
_4658
mRNA
_4659
mRNA
_4660
mRNA
_4661
13025
13026
13027
13028
13029
auxotrophy
Dropout Complete
-0.8
-0.1
-2.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-1.8
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.7
-1.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.1
-0.9
+0.1
N.D.
auxotrophy
YNB Glucose
-0.7
+0.0
-1.9
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-2.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.1
+0.1
-1.5
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.0
-1.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.5
-0.1
-1.2
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.4
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.2
-0.1
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.2
-0.5
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.2
-0.9
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.1
+0.3
N.D.
growth on ypd
YPD
+0.3
+0.1
+0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
-0.7
+1.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.1
+1.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.1
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
+0.5
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.4
+0.7
N.D.
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