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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13028 and 13029 are separated by 289 nucleotides
13029 and 13030 are separated by 340 nucleotides
13030 and 13031 are separated by 723 nucleotides
13031 and 13032 are separated by 326 nucleotides
mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713,553 to 716,343
13028
mRNA_4661: 13029 - K20180 VPS16 vacuolar protein sorting-associated protein 16, at 716,633 to 720,333
13029
mRNA_4662: 13030 - K20352 TMED10, ERV25 p24 family protein delta-1, at 720,674 to 721,650
13030
mRNA_4663: 13031 - K18619 CORO7 coronin-7, at 722,374 to 726,218
13031
mRNA_4664: 13032 - Hypothetical Protein, at 726,545 to 727,733
13032
Group
Condition
mRNA
_4660
mRNA
_4661
mRNA
_4662
mRNA
_4663
mRNA
_4664
13028
13029
13030
13031
13032
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-2.6
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
N.D.
-2.2
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
N.D.
+0.5
-0.5
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.2
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
N.D.
+0.5
-0.4
-0.1
growth on ypd
YPD
-0.4
N.D.
-0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
-0.7
N.D.
+0.7
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
-1.4
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
-0.5
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-1.1
N.D.
+0.8
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.6
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.6
-0.2
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.5
-0.2
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
+1.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.5
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
+1.0
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.5
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.9
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
+0.7
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
N.D.
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.1
N.D.
+0.9
+0.0
-0.1
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