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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13030 and 13031 are separated by 723 nucleotides
13031 and 13032 are separated by 326 nucleotides
13032 and 13033 are separated by 194 nucleotides
13033 and 13034 are separated by 145 nucleotides
mRNA_4662: 13030 - K20352 TMED10, ERV25 p24 family protein delta-1, at 720,674 to 721,650
13030
mRNA_4663: 13031 - K18619 CORO7 coronin-7, at 722,374 to 726,218
13031
mRNA_4664: 13032 - Hypothetical Protein, at 726,545 to 727,733
13032
mRNA_4665: 13033 - K02332 POLG1, MIP1 DNA polymerase gamma 1, at 727,928 to 732,665
13033
mRNA_4666: 13034 - KOG3429 Predicted peptidyl-tRNA hydrolase, at 732,811 to 733,473
13034
Group
Condition
mRNA
_4662
mRNA
_4663
mRNA
_4664
mRNA
_4665
mRNA
_4666
13030
13031
13032
13033
13034
ypd buoyancy
40 hrs No Buoyancy Separation
-2.6
+0.1
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
+0.2
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
+0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.7
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.0
-0.5
N.D.
N.D.
growth on ypd
YPD
-0.2
-0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.5
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.4
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
-0.6
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.2
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose
+1.0
-0.5
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.5
-0.2
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
-0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.3
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.4
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.0
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+1.0
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.8
+0.1
+0.1
N.D.
N.D.
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