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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13034 and 13035 are separated by 480 nucleotides
13035 and 13036 are separated by 731 nucleotides
13036 and 13037 are separated by 322 nucleotides
13037 and 13038 are separated by 251 nucleotides
mRNA_4666: 13034 - KOG3429 Predicted peptidyl-tRNA hydrolase, at 732,811 to 733,473
13034
mRNA_4667: 13035 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 733,954 to 735,722
13035
mRNA_4668: 13036 - Hypothetical Protein, at 736,454 to 737,863
13036
mRNA_4669: 13037 - K12627 LSM8 U6 snRNA-associated Sm-like protein LSm8, at 738,186 to 738,564
13037
mRNA_4670: 13038 - Hypothetical Protein, at 738,816 to 739,415
13038
Group
Condition
mRNA
_4666
mRNA
_4667
mRNA
_4668
mRNA
_4669
mRNA
_4670
13034
13035
13036
13037
13038
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.0
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
N.D.
+0.8
growth on ypd
YPD
N.D.
+0.0
-0.3
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.2
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.2
N.D.
+1.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.0
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.3
N.D.
+1.4
auxotrophy
YNB Glucose
N.D.
+0.3
+0.3
N.D.
+2.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.2
N.D.
+2.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
+0.4
N.D.
+2.0
auxotrophy
Dropout Complete
N.D.
+0.4
+0.2
N.D.
+2.8
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