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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13035 and 13036 are separated by 731 nucleotides
13036 and 13037 are separated by 322 nucleotides
13037 and 13038 are separated by 251 nucleotides
13038 and 13039 are separated by 200 nucleotides
mRNA_4667: 13035 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 733,954 to 735,722
13035
mRNA_4668: 13036 - Hypothetical Protein, at 736,454 to 737,863
13036
mRNA_4669: 13037 - K12627 LSM8 U6 snRNA-associated Sm-like protein LSm8, at 738,186 to 738,564
13037
mRNA_4670: 13038 - Hypothetical Protein, at 738,816 to 739,415
13038
mRNA_4671: 13039 - Hypothetical Protein, at 739,616 to 741,558
13039
Group
Condition
mRNA
_4667
mRNA
_4668
mRNA
_4669
mRNA
_4670
mRNA
_4671
13035
13036
13037
13038
13039
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
N.D.
-0.1
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
N.D.
-0.5
+0.5
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
N.D.
+0.4
-0.4
growth on ypd
YPD
+0.0
-0.3
N.D.
+0.7
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
N.D.
+0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
N.D.
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
N.D.
+0.7
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
N.D.
+1.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
-0.2
+0.9
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
+0.8
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
N.D.
+0.0
+1.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.3
N.D.
+1.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
N.D.
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.2
+1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
N.D.
+2.2
+0.2
auxotrophy
YNB Glucose
+0.3
+0.3
N.D.
+2.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.4
N.D.
+2.0
+0.4
auxotrophy
Dropout Complete
+0.4
+0.2
N.D.
+2.8
-0.1
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