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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13040 and 13041 are separated by 379 nucleotides
13041 and 13042 are separated by 525 nucleotides
13042 and 13043 are separated by 191 nucleotides
13043 and 13044 are separated by 360 nucleotides
mRNA_4672: 13040 - K11979 UBR7 E3 ubiquitin-protein ligase UBR7, at 742,031 to 743,506
13040
mRNA_4673: 13041 - K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase, at 743,886 to 745,346
13041
mRNA_4674: 13042 - K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13, at 745,872 to 747,839
13042
mRNA_4675: 13043 - SUPERFAMILY--SSF53448, at 748,031 to 749,259
13043
mRNA_4676: 13044 - K01101 E3.1.3.41 4-nitrophenyl phosphatase, at 749,620 to 750,873
13044
Group
Condition
mRNA
_4672
mRNA
_4673
mRNA
_4674
mRNA
_4675
mRNA
_4676
13040
13041
13042
13043
13044
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-1.9
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.4
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
-2.0
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.1
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.9
-1.3
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.5
-0.3
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
+0.3
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+1.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.6
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.9
-0.3
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.9
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.5
+1.0
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+1.4
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.8
+0.2
N.D.
N.D.
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