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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13043 and 13044 are separated by 360 nucleotides
13044 and 13045 are separated by 441 nucleotides
13045 and 13046 are separated by 308 nucleotides
13046 and 13047 are separated by 962 nucleotides
mRNA_4675: 13043 - SUPERFAMILY--SSF53448, at 748,031 to 749,259
13043
mRNA_4676: 13044 - K01101 E3.1.3.41 4-nitrophenyl phosphatase, at 749,620 to 750,873
13044
mRNA_4677: 13045 - K10426 DCTN4 dynactin 4, at 751,315 to 753,347
13045
mRNA_4678: 13046 - K11252 H2B histone H2B, at 753,656 to 754,294
13046
mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395
13047
Group
Condition
mRNA
_4675
mRNA
_4676
mRNA
_4677
mRNA
_4678
mRNA
_4679
13043
13044
13045
13046
13047
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.3
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.6
-0.2
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.3
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.5
+0.1
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