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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13047 and 13048 are separated by 212 nucleotides
13048 and 13049 are separated by 1254 nucleotides
13049 and 13050 are separated by 760 nucleotides
13050 and 13051 are separated by 381 nucleotides
mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395
13047
mRNA_4680: 13048 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 756,608 to 758,345
13048
mRNA_4681: 13049 - K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha, at 759,600 to 763,345
13049
mRNA_4682: 13050 - HMMPfam-Tim44-like domain-PF04280,SMART--SM00978,SUPERFAMILY--SSF54427, at 764,106 to 764,879
13050
mRNA_4683: 13051 - Hypothetical Protein, at 765,261 to 766,282
13051
Group
Condition
mRNA
_4679
mRNA
_4680
mRNA
_4681
mRNA
_4682
mRNA
_4683
13047
13048
13049
13050
13051
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
+0.0
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.4
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.5
N.D.
N.D.
growth on ypd
YPD
+0.7
+0.5
-0.1
N.D.
N.D.
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